api rework

app/build.gradle

@@ -150,6 +150,13 @@ processResources {
             into resourcesDir
         }
     }
+
+    doLast {
+        copy {
+            from file("$rootDir/openapi.yaml")
+            into file("${sourceSets.main.output.resourcesDir}/io/xpipe/app/resources/misc");
+        }
+    }
 }
 
 distTar {

app/src/main/java/io/xpipe/app/beacon/AppBeaconServer.java

@@ -119,6 +119,7 @@ public class AppBeaconServer {
         }));
 
         var resourceMap = Map.of(
+                "openapi.yaml", "misc/openapi.yaml",
                 "markdown.css", "misc/github-markdown-dark.css",
                 "highlight.min.js", "misc/highlight.min.js",
                 "github-dark.min.css", "misc/github-dark.min.css"

app/src/main/java/io/xpipe/app/beacon/impl/ConnectionQueryExchangeImpl.java

@@ -6,6 +6,7 @@ import io.xpipe.app.storage.DataStoreEntry;
 import io.xpipe.beacon.BeaconClientException;
 import io.xpipe.beacon.BeaconServerException;
 import io.xpipe.beacon.api.ConnectionQueryExchange;
+import io.xpipe.core.store.StorePath;
 
 import java.io.IOException;
 import java.util.ArrayList;
@@ -16,7 +17,7 @@ public class ConnectionQueryExchangeImpl extends ConnectionQueryExchange {
 
     @Override
     public Object handle(HttpExchange exchange, Request msg) throws IOException, BeaconClientException, BeaconServerException {
-        var catMatcher = Pattern.compile(toRegex(msg.getCategoryFilter()));
+        var catMatcher = Pattern.compile(toRegex("all connections/" + msg.getCategoryFilter()));
         var conMatcher = Pattern.compile(toRegex(msg.getConnectionFilter()));
 
         List<DataStoreEntry> found = new ArrayList<>();
@@ -45,7 +46,8 @@ public class ConnectionQueryExchangeImpl extends ConnectionQueryExchange {
 
         var mapped = new ArrayList<QueryResponse>();
         for (DataStoreEntry e : found) {
-            var cat = DataStorage.get().getStorePath(DataStorage.get().getStoreCategoryIfPresent(e.getCategoryUuid()).orElseThrow());
+            var names = DataStorage.get().getStorePath(DataStorage.get().getStoreCategoryIfPresent(e.getCategoryUuid()).orElseThrow()).getNames();
+            var cat = new StorePath(names.subList(1, names.size()));
             var obj = ConnectionQueryExchange.QueryResponse.builder()
                     .uuid(e.getUuid()).category(cat).connection(DataStorage.get()
                     .getStorePath(e)).type(e.getProvider().getId()).build();
@@ -55,6 +57,92 @@ public class ConnectionQueryExchangeImpl extends ConnectionQueryExchange {
     }
 
     private String toRegex(String pattern) {
-        return pattern.replaceAll("\\*\\*", ".*?").replaceAll("\\*","[^\\\\]*?");
+        // https://stackoverflow.com/a/17369948/6477761
+        StringBuilder sb = new StringBuilder(pattern.length());
+        int inGroup = 0;
+        int inClass = 0;
+        int firstIndexInClass = -1;
+        char[] arr = pattern.toCharArray();
+        for (int i = 0; i < arr.length; i++) {
+            char ch = arr[i];
+            switch (ch) {
+                case '\\':
+                    if (++i >= arr.length) {
+                        sb.append('\\');
+                    } else {
+                        char next = arr[i];
+                        switch (next) {
+                            case ',':
+                                // escape not needed
+                                break;
+                            case 'Q':
+                            case 'E':
+                                // extra escape needed
+                                sb.append('\\');
+                            default:
+                                sb.append('\\');
+                        }
+                        sb.append(next);
+                    }
+                    break;
+                case '*':
+                    if (inClass == 0)
+                        sb.append(".*");
+                    else
+                        sb.append('*');
+                    break;
+                case '?':
+                    if (inClass == 0)
+                        sb.append('.');
+                    else
+                        sb.append('?');
+                    break;
+                case '[':
+                    inClass++;
+                    firstIndexInClass = i+1;
+                    sb.append('[');
+                    break;
+                case ']':
+                    inClass--;
+                    sb.append(']');
+                    break;
+                case '.':
+                case '(':
+                case ')':
+                case '+':
+                case '|':
+                case '^':
+                case '$':
+                case '@':
+                case '%':
+                    if (inClass == 0 || (firstIndexInClass == i && ch == '^'))
+                        sb.append('\\');
+                    sb.append(ch);
+                    break;
+                case '!':
+                    if (firstIndexInClass == i)
+                        sb.append('^');
+                    else
+                        sb.append('!');
+                    break;
+                case '{':
+                    inGroup++;
+                    sb.append('(');
+                    break;
+                case '}':
+                    inGroup--;
+                    sb.append(')');
+                    break;
+                case ',':
+                    if (inGroup > 0)
+                        sb.append('|');
+                    else
+                        sb.append(',');
+                    break;
+                default:
+                    sb.append(ch);
+            }
+        }
+        return sb.toString();
     }
 }

app/src/main/java/io/xpipe/app/beacon/impl/HandshakeExchangeImpl.java

@@ -23,7 +23,7 @@ public class HandshakeExchangeImpl extends HandshakeExchange {
 
         var session = new BeaconSession(body.getClient(), UUID.randomUUID().toString());
         AppBeaconServer.get().addSession(session);
-        return Response.builder().token(session.getToken()).build();
+        return Response.builder().sessionToken(session.getToken()).build();
     }
 
     private boolean checkAuth(BeaconAuthMethod authMethod) {

app/src/main/java/io/xpipe/app/core/AppDesktopIntegration.java

@@ -5,6 +5,7 @@ import io.xpipe.app.core.mode.OperationMode;
 import io.xpipe.app.issue.ErrorEvent;
 import io.xpipe.app.launcher.LauncherInput;
 import io.xpipe.app.prefs.AppPrefs;
+import io.xpipe.app.util.PlatformState;
 import io.xpipe.app.util.ThreadHelper;
 import io.xpipe.core.process.OsType;
 
@@ -16,6 +17,10 @@ import java.util.List;
 public class AppDesktopIntegration {
 
     public static void setupDesktopIntegrations() {
+        if (PlatformState.getCurrent() != PlatformState.RUNNING) {
+            return;
+        }
+
         try {
             if (Desktop.isDesktopSupported()) {
                 Desktop.getDesktop().addAppEventListener(new SystemSleepListener() {

app/src/main/java/io/xpipe/app/storage/DataStorage.java

@@ -763,13 +763,13 @@ public abstract class DataStorage {
     public StorePath getStorePath(DataStoreEntry entry) {
         return StorePath.create(getStoreParentHierarchy(entry).stream()
                 .filter(e -> !(e.getStore() instanceof LocalStore))
-                .map(e -> e.getName().replaceAll("/", "_"))
+                .map(e -> e.getName().toLowerCase().replaceAll("/", "_"))
                 .toArray(String[]::new));
     }
 
     public StorePath getStorePath(DataStoreCategory entry) {
         return StorePath.create(getCategoryParentHierarchy(entry).stream()
-                .map(e -> e.getName().replaceAll("/", "_"))
+                .map(e -> e.getName().toLowerCase().replaceAll("/", "_"))
                 .toArray(String[]::new));
     }
 

app/src/main/resources/io/xpipe/app/resources/misc/github-markdown-dark.css

@@ -70,6 +70,12 @@ html {
     font-style: italic;
 }
 
+.markdown-body summary {
+    font-weight: 600;
+    padding-bottom: .3em;
+    font-size: 1.4em;
+}
+
 .markdown-body h1 {
     margin: .67em 0;
     font-weight: 600;
@@ -416,7 +422,7 @@ html {
 .markdown-body table,
 .markdown-body pre,
 .markdown-body details {
-    margin-top: 0;
+    margin-top: 16px;
     margin-bottom: 16px;
 }
 

app/src/main/resources/io/xpipe/app/resources/misc/github-markdown-light.css

@@ -542,10 +542,16 @@ html {
 .markdown-body table,
 .markdown-body pre,
 .markdown-body details {
-    margin-top: 0;
+    margin-top: 16px;
     margin-bottom: 16px;
 }
 
+.markdown-body summary {
+    font-weight: 600;
+    padding-bottom: .3em;
+    font-size: 1.4em;
+}
+
 .markdown-body blockquote > :first-child {
     margin-top: 0;
 }

beacon/src/main/java/io/xpipe/beacon/BeaconClient.java

@@ -26,7 +26,7 @@ public class BeaconClient {
         HandshakeExchange.Response response = client.performRequest(HandshakeExchange.Request.builder()
                 .client(information)
                 .auth(BeaconAuthMethod.Local.builder().authFileContent(auth).build()).build());
-        client.token = response.getToken();
+        client.token = response.getSessionToken();
         return client;
     }
 

beacon/src/main/java/io/xpipe/beacon/api/HandshakeExchange.java

@@ -35,6 +35,6 @@ public class HandshakeExchange extends BeaconInterface<HandshakeExchange.Request
     @Value
     public static class Response {
         @NonNull
-        String token;
+        String sessionToken;
     }
 }

openapi.yaml

@@ -1,7 +1,22 @@
 openapi: 3.0.1
 info:
   title: XPipe API Documentation
-  description: The XPipe API provides programmatic access to XPipe’s features.
+  description: |
+    The XPipe API provides programmatic access to XPipe’s features.
+    
+    The XPipe application will start up an HTTP server that can be used to send requests.
+    You can change the port of it in the settings menu.
+    Note that this server is HTTP-only for now as it runs only on localhost. HTTPS requests are not accepted.
+    
+    The main use case for the API right now is programmatically managing remote systems.
+    To start off, you can query connections based on various filters.
+    With the matched connections, you can start remote shell sessions for each one and run arbitrary commands in them.
+    You get the command exit code and output as a response, allowing you to adapt your control flow based on command outputs.
+    Any kind of passwords another secret are automatically provided by XPipe when establishing a shell connection.
+    If required password is not stored and is set to be dynamically prompted, the running XPipe application will ask you to enter any required passwords.
+    
+    You can quickly get started by either using this page as an API reference or alternatively import the [OpenAPI definition file](/openapi.yaml) into your API client of choice.
+    See the authentication handshake below on how to authenticate prior to sending requests.
   termsOfService: https://docs.xpipe.io/terms-of-service
   contact:
     name: XPipe - Contact us
@@ -11,16 +26,21 @@ externalDocs:
   description: XPipe - Plans and pricing
   url: https://xpipe.io/pricing
 servers:
-- url: https://localhost:21721
+  - url: http://localhost:21721
     description: XPipe Daemon API
-- url: https://localhost:21722
-  description: XPipe PTB Daemon API
 paths:
   /handshake:
     post:
-      summary: Create new session
+      summary: Establish a new API session
-      description: Creates a new API session, allowing you to send requests to the daemon once it is established.
+      description: |
+        Prior to sending requests to the API, you first have to establish a new API session via the handshake endpoint.
+        In the response you will receive a session token that you can use to authenticate during this session.
+        
+        This is done so that the daemon knows what kind of clients are connected and can manage individual capabilities for clients.
+        
+        Note that for development you can also turn off the required authentication in the XPipe settings menu, allowing you to send unauthenticated requests.
       operationId: handshake
+      security: []
       requestBody:
         required: true
         content:
@@ -54,7 +74,11 @@ paths:
   /connection/query:
     post:
       summary: Query connections
-      description: Queries all connections using various filters
+      description: |
+        Queries all connections using various filters.
+        
+        The filters support globs and can match the category names and connection names.
+        All matching is case insensitive.
       operationId: connectionQuery
       requestBody:
         required: true
@@ -65,13 +89,13 @@ paths:
             examples:
               all:
                 summary: All
-                value: {"categoryFilter": "**", "connectionFilter": "**", "typeFilter": "*"}
+                value: { "categoryFilter": "*", "connectionFilter": "*", "typeFilter": "*" }
               simple:
                 summary: Simple filter
                 value: { "categoryFilter": "default", "connectionFilter": "local machine", "typeFilter": "*" }
               globs:
                 summary: Globs
-                value: {"categoryFilter": "**", "connectionFilter": "**/podman/*", "typeFilter": "*"}
+                value: { "categoryFilter": "*", "connectionFilter": "*/podman/*", "typeFilter": "*" }
       responses:
         200:
           description: The query was successful. The body contains all matched connections.
@@ -79,6 +103,13 @@ paths:
             application/json:
               schema:
                 $ref: '#/components/schemas/ConnectionQueryResponse'
+              examples:
+                standard:
+                  summary: Matched connections
+                  value: { "found": [ { "uuid": "f0ec68aa-63f5-405c-b178-9a4454556d6b", "category": ["default"] ,
+                                        "connection": ["local machine"], "type": "local" },
+                    { "uuid": "e1462ddc-9beb-484c-bd91-bb666027e300", "category": ["default", "category 1"],
+                      "connection": ["ssh system", "shell environments", "bash"], "type": "shellEnvironment" } ] }
         400:
           $ref: '#/components/responses/BadRequest'
         401:
@@ -89,29 +120,107 @@ paths:
           $ref: '#/components/responses/NotFound'
         500:
           $ref: '#/components/responses/InternalServerError'
-  /daemon/open:
+  /shell/start:
     post:
-      summary: Open URLs
+      summary: Start shell connection
-      description: Opens main window or executes given actions.
+      description: |
-      operationId: daemonOpen
+        Starts a new shell session for a connection. If an existing shell session is already running for that connection, this operation will do nothing.
+        
+        Note that there are a variety of possible errors that can occur here when establishing the shell connection.
+        These errors will be returned with the HTTP return code 500.
+      operationId: shellStart
       requestBody:
         required: true
         content:
           application/json:
             schema:
-              type: object
+              $ref: '#/components/schemas/ShellStartRequest'
-              properties:
+            examples:
-                arguments:
+              local:
-                  description: |-
+                summary: Start local shell
-                    Arguments to open. These can be URLs of various different types to perform certain actions.
+                value: { "uuid": "f0ec68aa-63f5-405c-b178-9a4454556d6b" }
-                  type: array
-                  minItems: 0
-                  items:
-                    type: string
-                    example: file:///home/user/.ssh/
       responses:
         200:
-          $ref: '#/components/responses/Success'
+          description: The operation was successful. The shell session was started.
+        400:
+          $ref: '#/components/responses/BadRequest'
+        401:
+          $ref: '#/components/responses/Unauthorized'
+        403:
+          $ref: '#/components/responses/Forbidden'
+        404:
+          $ref: '#/components/responses/NotFound'
+        500:
+          $ref: '#/components/responses/InternalServerError'
+  /shell/stop:
+    post:
+      summary: Stop shell connection
+      description: |
+        Stops an existing shell session for a connection.
+        
+        This operation will return once the shell has exited.
+        If the shell is busy or stuck, you might have to work with timeouts to account for these cases.
+      operationId: shellStop
+      requestBody:
+        required: true
+        content:
+          application/json:
+            schema:
+              $ref: '#/components/schemas/ShellStopRequest'
+            examples:
+              local:
+                summary: Stop local shell
+                value: { "uuid": "f0ec68aa-63f5-405c-b178-9a4454556d6b" }
+      responses:
+        200:
+          description: The operation was successful. The shell session was stopped.
+        400:
+          $ref: '#/components/responses/BadRequest'
+        401:
+          $ref: '#/components/responses/Unauthorized'
+        403:
+          $ref: '#/components/responses/Forbidden'
+        404:
+          $ref: '#/components/responses/NotFound'
+        500:
+          $ref: '#/components/responses/InternalServerError'
+  /shell/exec:
+    post:
+      summary: Execute command in a shell session
+      description: |
+        Runs a command in an active shell session and waits for it to finish. The exit code and output will be returned in the response.
+        
+        Note that a variety of different errors can occur when executing the command.
+        If the command finishes, even with an error code, a normal HTTP 200 response will be returned.
+        However, if any other error occurs like the shell not responding or exiting unexpectedly, an HTTP 500 response will be returned.
+      operationId: shellExec
+      requestBody:
+        required: true
+        content:
+          application/json:
+            schema:
+              $ref: '#/components/schemas/ShellExecRequest'
+            examples:
+              user:
+                summary: echo $USER
+                value: { "uuid": "f0ec68aa-63f5-405c-b178-9a4454556d6b", "command": "echo $USER" }
+              invalid:
+                summary: invalid
+                value: { "uuid": "f0ec68aa-63f5-405c-b178-9a4454556d6b", "command": "invalid" }
+      responses:
+        200:
+          description: The operation was successful. The shell command finished.
+          content:
+            application/json:
+              schema:
+                $ref: '#/components/schemas/ShellExecResponse'
+              examples:
+                user:
+                  summary: echo $USER
+                  value: { "exitCode": 0, "stdout": "root", "stderr": "" }
+                fail:
+                  summary: invalid
+                  value: { "exitCode": 127, "stdout": "", "stderr": "invalid: command not found" }
         400:
           $ref: '#/components/responses/BadRequest'
         401:
@@ -124,18 +233,62 @@ paths:
           $ref: '#/components/responses/InternalServerError'
 components:
   schemas:
+    ShellStartRequest:
+      type: object
+      properties:
+        connection:
+          type: string
+          description: The connection uuid
+      required:
+        - connection
+    ShellStopRequest:
+      type: object
+      properties:
+        connection:
+          type: string
+          description: The connection uuid
+      required:
+        - connection
+    ShellExecRequest:
+      type: object
+      properties:
+        connection:
+          type: string
+          description: The connection uuid
+        command:
+          type: string
+          description: The command to execute
+      required:
+        - connection
+        - command
+    ShellExecResponse:
+      type: object
+      properties:
+        exitCode:
+          type: integer
+          description: The exit code of the command
+        stdout:
+          type: string
+          description: The stdout output of the command
+        stderr:
+          type: string
+          description: The stderr output of the command
+      required:
+        - exitCode
+        - stdout
+        - stderr
     ConnectionQueryRequest:
       type: object
       properties:
         categoryFilter:
           type: string
-          description: The filter string to match categories. Categories are delimited by / if they are hierarchical. The filter supports globs with * and **.
+          description: The filter string to match categories. Categories are delimited by / if they are hierarchical. The filter supports globs.
         connectionFilter:
           type: string
-          description: The filter string to match connection names. Connection names are delimited by / if they are hierarchical. The filter supports globs with * and **.
+          description: The filter string to match connection names. Connection names are delimited by / if they are hierarchical. The filter supports globs.
         typeFilter:
           type: string
-          description: The filter string to connection types. Every unique type of connection like SSH or docker has its own type identifier that you can match. The filter supports globs with *.
+          description: The filter string to connection types. Every unique type of connection like SSH or docker has its own type identifier that you can match. The filter supports globs.
       required:
         - categoryFilter
         - connectionFilter
@@ -153,11 +306,17 @@ components:
                 type: string
                 description: The unique id of the connection
               category:
+                type: array
+                description: The full category path as an array
+                items:
                   type: string
-                description: The full category path
+                  description: Individual category name
               connection:
+                type: array
+                description: The full connection name path as an array
+                items:
                   type: string
-                description: The full connection name path
+                  description: Individual connection name
               type:
                 type: string
                 description: The type identifier of the connection
@@ -181,11 +340,11 @@ components:
     HandshakeResponse:
       type: object
       properties:
-        token:
+        sessionToken:
           type: string
           description: The generated bearer token that can be used for authentication in this session
       required:
-      - token
+        - sessionToken
     AuthMethod:
       type: object
       discriminator:
@@ -256,9 +415,9 @@ components:
     InternalServerError:
       description: Internal error.
   securitySchemes:
-    auth_header:
+    bearerAuth:
-      type: apiKey
+      type: http
-      description: Authentication with `Authorization` header and `Bearer`
+      scheme: bearer
-        authentication scheme
+      description: The bearer token used is the session token that you receive from the handshake exchange.
-      name: Authorization
+security:
-      in: header
+  - bearerAuth: []