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+/**
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+ * @author n1474335 [n1474335@gmail.com]
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+ * @copyright Crown Copyright 2016
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+ * @license Apache-2.0
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+ */
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+
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+import Operation from "../Operation";
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+import Utils from "../Utils";
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+
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+/**
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+ * Offset checker operation
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+ */
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+class OffsetChecker extends Operation {
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+
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+ /**
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+ * OffsetChecker constructor
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+ */
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+ constructor() {
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+ super();
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+
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+ this.name = "Offset checker";
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+ this.module = "Default";
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+ this.description = "Compares multiple inputs (separated by the specified delimiter) and highlights matching characters which appear at the same position in all samples.";
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+ this.inputType = "string";
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+ this.outputType = "html";
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+ this.args = [
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+ {
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+ "name": "Sample delimiter",
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+ "type": "binaryString",
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+ "value": "\\n\\n"
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+ }
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+ ];
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+ }
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+
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+ /**
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+ * @param {string} input
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+ * @param {Object[]} args
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+ * @returns {html}
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+ */
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+ run(input, args) {
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+ const sampleDelim = args[0],
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+ samples = input.split(sampleDelim),
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+ outputs = new Array(samples.length);
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+ let i = 0,
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+ s = 0,
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+ match = false,
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+ inMatch = false,
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+ chr;
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+
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+ if (!samples || samples.length < 2) {
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+ return "Not enough samples, perhaps you need to modify the sample delimiter or add more data?";
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+ }
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+
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+ // Initialise output strings
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+ outputs.fill("", 0, samples.length);
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+
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+ // Loop through each character in the first sample
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+ for (i = 0; i < samples[0].length; i++) {
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+ chr = samples[0][i];
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+ match = false;
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+
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+ // Loop through each sample to see if the chars are the same
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+ for (s = 1; s < samples.length; s++) {
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+ if (samples[s][i] !== chr) {
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+ match = false;
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+ break;
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+ }
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+ match = true;
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+ }
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+
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+ // Write output for each sample
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+ for (s = 0; s < samples.length; s++) {
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+ if (samples[s].length <= i) {
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+ if (inMatch) outputs[s] += "</span>";
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+ if (s === samples.length - 1) inMatch = false;
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+ continue;
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+ }
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+
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+ if (match && !inMatch) {
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+ outputs[s] += "<span class='hl5'>" + Utils.escapeHtml(samples[s][i]);
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+ if (samples[s].length === i + 1) outputs[s] += "</span>";
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+ if (s === samples.length - 1) inMatch = true;
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+ } else if (!match && inMatch) {
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+ outputs[s] += "</span>" + Utils.escapeHtml(samples[s][i]);
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+ if (s === samples.length - 1) inMatch = false;
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+ } else {
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+ outputs[s] += Utils.escapeHtml(samples[s][i]);
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+ if (inMatch && samples[s].length === i + 1) {
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+ outputs[s] += "</span>";
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+ if (samples[s].length - 1 !== i) inMatch = false;
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+ }
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+ }
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+
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+ if (samples[0].length - 1 === i) {
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+ if (inMatch) outputs[s] += "</span>";
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+ outputs[s] += Utils.escapeHtml(samples[s].substring(i + 1));
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+ }
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+ }
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+ }
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+
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+ return outputs.join(sampleDelim);
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+ }
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+
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+}
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+
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+export default OffsetChecker;
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